PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J152700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 233aa    MW: 25453.9 Da    PI: 7.4397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J152700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-1071118454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  rE+ RRdr+N++f+eL  +l +    + +K +K++iL  A + +++L
  Pavir.J152700.1.p  71 TKACREKLRRDRLNERFNELCAILEPG---KPPKADKVDILSDAARLLNQL 118
                        5678**********************9...99**************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-1361133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.9667118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.86E-771123No hitNo description
PfamPF000105.7E-871118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-773124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1274140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCGGQAGGW LLDYGLVEEE IQGSEFIYMV DDPAVSSVIL GFDAPRKEDG VQDNPAAKKR  60
SRPESSAPPG TKACREKLRR DRLNERFNEL CAILEPGKPP KADKVDILSD AARLLNQLRA  120
EAQKLKQSNE SLQDSIKSLK AEKSELRDEK TRLKAERERL EQMLKGVSAA AAPAPFLPHP  180
AASAPSFHPA AFAQAGKFVL YPTYPPPAAF WQWIPPTSLD TSKDPAHWPP VA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.36460.0leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0363720.0BT036372.1 Zea mays full-length cDNA clone ZM_BFb0110A15 mRNA, complete cds.
GenBankBT0402710.0BT040271.1 Zea mays full-length cDNA clone ZM_BFc0075C03 mRNA, complete cds.
GenBankBT0413880.0BT041388.1 Zea mays full-length cDNA clone ZM_BFc0115M23 mRNA, complete cds.
GenBankBT0876160.0BT087616.1 Zea mays full-length cDNA clone ZM_BFb0133E06 mRNA, complete cds.
GenBankKJ7268900.0KJ726890.1 Zea mays clone pUT3433 bHLH transcription factor (bHLH118) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961887.11e-149PREDICTED: transcription factor ILR3-like
SwissprotQ9FH374e-60ILR3_ARATH; Transcription factor ILR3
TrEMBLK3Z9B21e-149K3Z9B2_SETIT; Uncharacterized protein
STRINGSi023133m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93863136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-54bHLH family protein